| 1 | Francis Mourey (Fra) FDJ-BigMat | 1:04:05 |
| 2 | Lukas Flückiger (Swi) Trek World Racing | 0:00:17 |
| 3 | Enrico Franzoi (Ita) Selle Italia-Guerciotti | 0:00:39 |
| 4 | Mathias Flückiger (Swi) Trek World Racing | 0:00:46 |
| 5 | Simon Zahner (Swi) EKZ Racing Team | 0:00:54 |
| 6 | Philipp Walsleben (Ger) BKCP - Powerplus | 0:01:10 |
| 7 | Steve Chainel (Fra) FDJ-BigMat | 0:01:17 |
| 8 | Arnaud Grand (Swi) Telenet - Fidea | 0:01:20 |
| 9 | Thijs Van Amerongen (Ned) AA-Drink | 0:01:33 |
| 10 | Martin Bina (Cze) CT Tabor | 0:01:59 |
| 11 | Sven Nys (Bel) Landbouwkrediet-Euphony | 0:02:00 |
| 12 | Jérome Chevallier (Fra) | 0:02:23 |
| 13 | Sven Vanthourenhout (Bel) Landbouwkrediet-Euphony | 0:02:41 |
| 14 | Marcel Wildhaber (Swi) Scott-Swisspower MTB Racing Team | 0:02:50 |
| 15 | Lars Forster (Swi) Tower Sport-VC Eschenbach | 0:02:59 |
| 16 | Lukas Winterberg (Swi) Team Müller Gartengestaltung | 0:03:06 |
| 17 | Marco Ponta (Ita) Centro Sportivo | 0:03:16 |
| 18 | Thomas Paccagnella (Ita) ADV Team | 0:03:25 |
| 19 | Julien Taramarcaz (Swi) BMC Mountainbike Racing Team | 0:03:28 |
| 20 | Egoitz Murgoitio Rekalde (Spa) Grupo Hiremet Taldea | 0:03:36 |
| 21 | Andreas Moser (Swi) Zaunteam Mitteland / VC Bützberg | 0:03:38 |
| 22 | Jonathan Lastra Martinez (Spa) Grupo Hiremet Taldea | 0:03:45 |
| 23 | Michael Schweizer (Ger) Stevens Racing Team | 0:03:53 |
| 24 | Nico Brüngger (Swi) EKZ Racing Team | 0:04:05 |
| 25 | Lukas Müller (Swi) Team Müller Gartengestaltung | 0:04:13 |
| 26 | Marc Stutzmann (Swi) RSC Aaretal / Free-Mountain Scott | 0:04:19 |
| 27 | Severin Sagesser (Swi) Fischer Junior MTB Team | 0:04:34 |
| 28 | David Kasek (Cze) CEZ Cyklo Team Tabor | 0:04:45 |
| 29 | Fabian Lienhard (Swi) EKZ Racing Team | 0:04:54 |
| 30 | Vaclav Metlicka (Svk) Johnson Controls AS MB | 0:05:15 |
| 31 | Michael Wildhaber (Swi) Tower Sport-VC Eschenbach | 0:05:27 |
| 32 | René Lang (Swi) VMC Liestal-Wirz/Helvetia-Rauber AG | 0:05:52 |
| 33 | Bryan Falaschi (Ita) Selle Italia-Guerciotti | 0:06:06 |
| 34 | Julien Pion (Fra) Equipe Cycliste Armée de Terre CSA | 0:07:04 |
| 35 | Igor Smarzaro (Ita) ASD Ciclisti Padovani 2011 | |
| 36 | Melvin Rulliere (Fra) SCO Dijon | |
| 37 | Jonas Baumann (Swi) Wheeler iXS Team/Mauna Loa Bikers | |
| 38 | Stefan Achermann (Swi) VC Sursee | |
| 39 | Yari Cisotto (Ita) Carraro Team Trentino | |
