| 1 | Natnael Berhane (Eritrea) | 3:17:12 |
| 2 | Tesfay Abrhaha Habtemariam (Eritrea) | |
| 3 | Jacques Janse Van Rensburg (South Africa) | |
| 4 | Abdelbaset Hannachi (Algeria) | |
| 5 | Youcef Reguigui (Algeria) | |
| 6 | Meran Russan (Eritrea) | |
| 7 | Abdellah Ben Youcef (Algeria) | |
| 8 | Mouhcine Lahsaini (Morocco) | |
| 9 | Adil Jelloul (Morocco) | |
| 10 | Add Alla Mohamed Mohamed Sherif (Egypt) | |
| 11 | Reda Aadel (Morocco) | |
| 12 | Jani Tewelde Weldegaber (Eritrea) | |
| 13 | Daniel Teklehaymanot (Eritrea) | |
| 14 | Azzadine Lagab (Algeria) | |
| 15 | Jacobus Venter (South Africa) | 0:00:04 |
| 16 | Adrien Niyonshuti (Rwanda) | 0:00:06 |
| 17 | Abderrahman Bourezza (Algeria) | 0:00:17 |
| 18 | Ahmed Mahmoud (Egypt) | |
| 19 | Mohamed Reda Benoua (Algeria) | 0:01:04 |
| 20 | Lotto Petrus (Namibia) | 0:02:26 |
| 21 | Herman Fouche (South Africa) | 0:02:35 |
| 22 | Yonatan Mesfin (Eritrea) | |
| 23 | Louis Meintjes (South Africa) | |
| 24 | Dawit Araya (Eritrea) | |
| 25 | Hamisi Mkona (Tanzania) | |
| 26 | Osama Asran (Egypt) | |
| 27 | Joseph Biziyaremye (Rwanda) | |
| 28 | Nicodem Habiyambere (Rwanda) | |
| 29 | Gasore Hategeka (Rwanda) | |
| 30 | Freqalsi Abrha (Eritrea) | |
| 31 | Tarik Chaoufi (Morocco) | |
| 32 | Abdelati Saadoune (Morocco) | |
| 33 | Brian Zengeni (Zimbabwe) | |
| 34 | Mohamed Ahmed Aalaa (Egypt) | |
| 35 | Fayçal Hamza (Algeria) | |
| 36 | Nathan Byukusenge (Rwanda) | |
| 37 | Ismail Ayoune (Morocco) | |
| 38 | Issiaka Fofana (Ivory Coast) | |
| 39 | Chris Germain (Seychelles) | |
| 40 | Bright Chapongo (Zimbabwe) | 0:02:40 |
| 41 | Amr Ahmed (Egypt) | |
| 42 | Richard Laningo (Tanzania) | 0:02:43 |
| 43 | Mohammed Said Elammoury (Morocco) | 0:02:48 |
| 44 | John Kitivei (Tanzania) | 0:07:23 |
| 45 | Gaël N'zoughe (Gabon) | 0:07:46 |
| 46 | Bolodigui Ouattara (Ivory Coast) | 0:07:48 |
| 47 | Leone Matovu (Uganda) | 0:08:36 |
| 48 | Soufiane Haddi (Morocco) | 0:08:41 |
| 49 | Edward Pothin (Seychelles) | 0:12:09 |
| 50 | Alsayed Ali (Egypt) | 0:12:48 |
