| 1 | Daniel Teklehaymanot (Eri) Eritrea | 3:05:48 |
| 2 | Freqalsi Abrha (Eri) Eritrea | |
| 3 | Meran Russan (Eri) Eritrea | |
| 4 | Adil Jelloul (Mar) Morocco | 0:02:43 |
| 5 | Nicodem Habiyambere (Rwa) | 0:02:52 |
| 6 | Gasore Hategeka (Rwa) | 0:04:07 |
| 7 | Adrien Niyonshuti (Rwa) | 0:04:53 |
| 8 | Tesfay Abrhaha Habtemariam (Eri) Eritrea | 0:05:39 |
| 9 | Dawit Araya (Eri) Eritrea | 0:07:19 |
| 10 | Soufiane Haddi (Mar) Morocco | 0:10:15 |
| 11 | Tarik Chaoufi (Mar) Morocco | |
| 12 | Hillary Kiprotich (Ken) Kenya | |
| 13 | Emanuel Rudahunga (Rwa) | |
| 14 | Lahcen Saber (Mar) Morocco | 0:10:26 |
| 15 | Nyandwi Uwase (Rwa) | 0:11:42 |
| 16 | Joseph Echwa (Ken) Kenya | |
| 17 | Nathan Byukusenge (Rwa) | |
| 18 | Emmanuel Kipkemei (Ken) Kenya | 0:13:48 |
| 19 | Obedi Ruvogera (Rwa) | |
| 20 | Peter Muya (Ken) Kenya | 0:15:34 |
| 21 | Jani Tewelde Weldegaber (Eri) Eritrea | 0:16:21 |
| 22 | Richard Laningo (Tan) Tanzania | 0:16:32 |
| 23 | David Nkurunziza (Rwa) | 0:20:08 |
| 24 | Simon Kitoki Kumwaka (Ken) Kenya | |
| 25 | Simon Kimeli (Ken) Kenya | |
| 26 | Rafiki Uwimana (Rwa) | |
| 27 | Ahmed Lhanafi (Mar) Morocco | 0:21:52 |
| 28 | Innocent Uwamungu (Rwa) | 0:25:06 |
| 29 | Janvier Hadi (Rwa) | |
| 30 | Joseph Biziyaremye (Rwa) | |
| 31 | Gad Ngirowonsanga (Rwa) | |
| 32 | Issa Ntibitura (Rwa) | |
| 33 | Mussa Melami (Tan) Tanzania | 0:27:18 |
| 34 | Jacques Mbarushimana (Rwa) | 0:29:49 |
| 35 | Achilese Katumba (Uga) Uganda | 0:29:58 |
| 36 | Emile Bintunimana (Rwa) | 0:33:30 |
| 37 | Leone Matovu (Uga) Uganda | 0:33:46 |
| 38 | Sebastian Semakula (Uga) Uganda | 0:38:25 |
| 39 | Saidi Jumanne (Tan) Tanzania | 0:39:20 |
| 40 | Wavamunno Muzamiru (Uga) Uganda | 0:43:19 |
| 41 | Amani Munishi (Tan) Tanzania | 0:44:14 |
| 42 | Emmanuel Raphael (Tan) Tanzania | 0:45:06 |
| 43 | Seni Konda (Tan) Tanzania | 0:51:44 |
| 44 | Robert Kiwendo (Uga) Uganda | 0:53:46 |
| 45 | Samuel Mwiseneza (Rwa) | 0:54:32 |
| DNF | Ben Mwanje (Uga) Uganda | |
| DNF | Innocent Sibomana (Rwa) | |
