| 1 | Takashi Miyazawa (Team Nippo) | 5:14:03 |
| 2 | Shinri Suzuki (Shimano Racing) | |
| 3 | Hidenori Nodera (Shimano Racing) | |
| 4 | Junya Sano (Team Nippo) | 0:00:01 |
| 5 | Miyataka Shimizu (Bridgestone Anchor) | 0:00:04 |
| 6 | Taiji Nishitani (Aisan Racing Team) | 0:00:12 |
| 7 | Yoshimitsu Hiratsuka (Shimano Racing) | 0:00:39 |
| 8 | Makoto Iijima (Bridgestone Anchor) | 0:01:10 |
| 9 | Nariyuki Masuda (Team Nippo) | 0:01:17 |
| 10 | Makoto Nakamura (Utsunomiya Blitzen) | 0:02:03 |
| 11 | Kazuhiro Mori (Aisan Racing Team) | 0:02:18 |
| 12 | Akihiro Takaoka | 0:02:20 |
| 13 | Yukiya Arashiro (Bbox Bouygues Telecom) | 0:02:23 |
| 14 | Yasuharu Nakajima (Team Nippo) | |
| 15 | Yukihiro Doi (Skil - Shimano) | |
| 16 | Tomoya Kano (Bridgestone Anchor) | 0:04:23 |
| 17 | Yusuke Hatanaka (Shimano Racing) | |
| 18 | Masamichi Yamamoto (Bridgestone Anchor) | 0:04:29 |
| 19 | Ryohei Komori | 0:04:34 |
| 20 | Taichi Moriyama | |
| 21 | Jumpei Murakami (Shimano Racing) | |
| 22 | Makoto Shimada | |
| 23 | Yu Takenouchi | 0:04:35 |
| 24 | Naoto Ise | 0:04:36 |
| 25 | Daisuke Hioki | 0:04:45 |
| 26 | Naoto Saita | 0:04:50 |
| 27 | Kazuyuki Manabe | 0:04:53 |
| 28 | Keita Iwashima | |
| 29 | Masaki Wakumoto | 0:04:55 |
| 30 | Yoshiyuki Abe | 0:06:06 |
| 31 | Yuzuru Suzuki (Shimano Racing) | 0:06:07 |
| 32 | Akira Kakinuma (Utsunomiya Blitzen) | 0:06:09 |
| 33 | Shinichi Fukushima (Geumsan Ginseng Asia) | 0:07:00 |
| 34 | Jun Otsuka | 0:09:21 |
| 35 | Yosuke Kojima | 0:09:37 |
| 36 | Nonaka Ryoma | 0:12:39 |
| 37 | Kenichi Suzuki (Aisan Racing Team) | 0:13:45 |
