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| 1 | Sung Baek Park (Kor) Korea | 1:23:42 |
| 2 | Shinri Suzuki (Jpn) Shimano Racing | Row 1 - Cell 2 |
| 3 | Takashi Miyazawa (Jpn) Team Nippo | Row 2 - Cell 2 |
| 4 | Shih Hsin Hsiao (Tpe) Action Cycling Team | Row 3 - Cell 2 |
| 5 | Kyosuke Kasahara (Jpn) | Row 4 - Cell 2 |
| 6 | Takeaki Ayabe (Jpn) Aisan Racing Team | Row 5 - Cell 2 |
| 7 | Wei Cheng Lee (Tpe) Action Cycling Team | Row 6 - Cell 2 |
| 8 | Jong Gyun Choi (Kor) Korea | Row 7 - Cell 2 |
| 9 | Komuro Masanari (Jpn) | Row 8 - Cell 2 |
| 10 | Miyataka Shimizu (Jpn) Bridgestone Anchor | Row 9 - Cell 2 |
| 11 | Yoshimitsu Tsuji (Jpn) Utsunomiya Blitzen | Row 10 - Cell 2 |
| 12 | Jumpei Murakami (Jpn) Shimano Racing | Row 11 - Cell 2 |
| 13 | Masafumi Yamane (Jpn) | Row 12 - Cell 2 |
| 14 | Hikaru Kosaka (Jpn) Utsunomiya Blitzen | Row 13 - Cell 2 |
| 15 | Shinichi Fukushima (Jpn) Geumsan Ginseng Asia | Row 14 - Cell 2 |
| 16 | Keita Iwashima (Jpn) | Row 15 - Cell 2 |
| 17 | Kiwamu Matsuda (Jpn) | Row 16 - Cell 2 |
| 18 | Hayato Yoshida (Jpn) | Row 17 - Cell 2 |
| 19 | Junya Sano (Jpn) Team Nippo | Row 18 - Cell 2 |
| 20 | Kohei Yamamoto (Jpn) | Row 19 - Cell 2 |
| 21 | Yasuhiro Nito (Jpn) | Row 20 - Cell 2 |
| 22 | Gyung Gu Jang (Kor) Korea | Row 21 - Cell 2 |
| 23 | Stefan Poll (Aut) Arbö Ktm - Gebrüder Weiss | 0:00:04 |
| 24 | Kazuo Inoue (Jpn) Team Nippo | Row 23 - Cell 2 |
| 25 | Kenji Itami (Jpn) Bridgestone Anchor | Row 24 - Cell 2 |
| 26 | Tomoya Kano (Jpn) Bridgestone Anchor | Row 25 - Cell 2 |
| 27 | Yoshimitsu Hiratsuka (Jpn) Shimano Racing | Row 26 - Cell 2 |
| 28 | Chun Kai Feng (Tpe) Action Cycling Team | Row 27 - Cell 2 |
| 29 | Kohei Uchima (Jpn) | Row 28 - Cell 2 |
| 30 | Ryota Nishizono (Jpn) | Row 29 - Cell 2 |
| 31 | Taiji Nishitani (Jpn) Aisan Racing Team | Row 30 - Cell 2 |
| 32 | Masaru Fukuhara (Jpn) Bridgestone Anchor | Row 31 - Cell 2 |
| 33 | Genki Yamamoto (Jpn) | Row 32 - Cell 2 |
| 34 | Shuhei Oda (Jpn) | Row 33 - Cell 2 |
| 35 | Kazuhiro Mori (Jpn) Aisan Racing Team | Row 34 - Cell 2 |
| 36 | Brian Barkouse (Jpn) | 0:00:09 |
| 37 | Yusuke Hatanaka (Jpn) Shimano Racing | Row 36 - Cell 2 |
| 38 | Masaki Hirabayashi (Jpn) | Row 37 - Cell 2 |
| 39 | Jung Hwan Youm (Kor) Korea | Row 38 - Cell 2 |
| 40 | Naru Nakata (Jpn) | Row 39 - Cell 2 |
| 41 | Vincenzo Garofolo (Ita) Team Nippo | Row 40 - Cell 2 |
| 42 | Masatsugu Takamiya (Jpn) | Row 41 - Cell 2 |
| 43 | Akira Kakinuma (Jpn) Utsunomiya Blitzen | Row 42 - Cell 2 |
| 44 | Kenichi Suzuki (Jpn) Aisan Racing Team | 0:00:17 |
| 45 | Yuzuru Suzuki (Jpn) Shimano Racing | 0:00:18 |
| 46 | Makoto Nakamura (Jpn) Utsunomiya Blitzen | 0:00:25 |
| 47 | Masaki Gunji (Jpn) | 0:02:18 |
| 48 | Takashi Kurisu (Jpn) | Row 47 - Cell 2 |
| 49 | Chun Liang Pan (Tpe) Action Cycling Team | 0:02:31 |
| 50 | Masamichi Yamamoto (Jpn) Bridgestone Anchor | 0:02:37 |
| 51 | Masahiko Yasui (Jpn) | 0:03:06 |
| 52 | Ryota Tomioka (Jpn) | Row 51 - Cell 2 |
| 53 | Masaki Amemiya (Jpn) | Row 52 - Cell 2 |
| 54 | Sei Uno (Jpn) | Row 53 - Cell 2 |
| 55 | Masaaki Kikuchi (Jpn) Team Nippo | Row 54 - Cell 2 |
| 56 | Nozomu Kimori (Jpn) | Row 55 - Cell 2 |
| 57 | Yoshihiro Itabashi (Jpn) | 0:03:51 |
| 58 | Hiroki Osaka (Jpn) | 0:04:33 |
| 59 | Keisuke Kimura (Jpn) | 0:05:08 |
| 60 | Kousuke Harakawa (Jpn) | 0:05:13 |
| 61 | Yasumasa Adachi (Jpn) | 0:05:25 |
| DNF | Nara Motoi (Jpn) Geumsan Ginseng Asia | Row 61 - Cell 2 |
| DNF | Ryoma Kaido (Jpn) Geumsan Ginseng Asia | Row 62 - Cell 2 |
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| 1 | Miyataka Shimizu (Jpn) Bridgestone Anchor | 16:05:51 |
| 2 | Junya Sano (Jpn) Team Nippo | 0:00:05 |
| 3 | Jong Gyun Choi (Kor) Korea | 0:00:12 |
| 4 | Takeaki Ayabe (Jpn) Aisan Racing Team | 0:00:22 |
| 5 | Jumpei Murakami (Jpn) Shimano Racing | 0:00:23 |
| 6 | Stefan Poll (Aut) Arbö Ktm - Gebrüder Weiss | 0:00:43 |
| 7 | Kohei Uchima (Jpn) | 0:00:52 |
| 8 | Tomoya Kano (Jpn) Bridgestone Anchor | 0:01:06 |
| 9 | Chun Kai Feng (Tpe) Action Cycling Team | 0:05:15 |
| 10 | Jung Hwan Youm (Kor) Korea | 0:05:16 |
| 11 | Vincenzo Garofolo (Ita) Team Nippo | 0:05:42 |
| 12 | Yuzuru Suzuki (Jpn) Shimano Racing | 0:05:56 |
| 13 | Takashi Miyazawa (Jpn) Team Nippo | 0:06:09 |
| 14 | Shinri Suzuki (Jpn) Shimano Racing | 0:06:19 |
| 15 | Kazuhiro Mori (Jpn) Aisan Racing Team | 0:06:24 |
| 16 | Taiji Nishitani (Jpn) Aisan Racing Team | 0:06:26 |
| 17 | Yoshimitsu Tsuji (Jpn) Utsunomiya Blitzen | 0:06:33 |
| 18 | Shinichi Fukushima (Jpn) Geumsan Ginseng Asia | Row 17 - Cell 2 |
| 19 | Yusuke Hatanaka (Jpn) Shimano Racing | 0:06:34 |
| 20 | Gyung Gu Jang (Kor) Korea | 0:06:36 |
| 21 | Brian Barkouse (Jpn) | 0:06:37 |
| 22 | Masaru Fukuhara (Jpn) Bridgestone Anchor | 0:06:45 |
| 23 | Hayato Yoshida (Jpn) | Row 22 - Cell 2 |
| 24 | Kazuo Inoue (Jpn) Team Nippo | 0:06:47 |
| 25 | Keita Iwashima (Jpn) | 0:06:55 |
| 26 | Sung Baek Park (Kor) Korea | 0:07:04 |
| 27 | Naru Nakata (Jpn) | 0:07:06 |
| 28 | Ryota Nishizono (Jpn) | Row 27 - Cell 2 |
| 29 | Akira Kakinuma (Jpn) Utsunomiya Blitzen | 0:07:11 |
| 30 | Genki Yamamoto (Jpn) | 0:07:13 |
| 31 | Kohei Yamamoto (Jpn) | 0:07:14 |
| 32 | Kenji Itami (Jpn) Bridgestone Anchor | 0:07:34 |
| 33 | Kiwamu Matsuda (Jpn) | 0:09:09 |
| 34 | Kyosuke Kasahara (Jpn) | 0:09:22 |
| 35 | Hikaru Kosaka (Jpn) Utsunomiya Blitzen | 0:09:28 |
| 36 | Yasuhiro Nito (Jpn) | 0:09:29 |
| 37 | Shih Hsin Hsiao (Tpe) Action Cycling Team | 0:09:42 |
| 38 | Masafumi Yamane (Jpn) | 0:09:47 |
| 39 | Shuhei Oda (Jpn) | 0:10:07 |
| 40 | Masatsugu Takamiya (Jpn) | 0:10:09 |
| 41 | Yoshimitsu Hiratsuka (Jpn) Shimano Racing | 0:11:06 |
| 42 | Takashi Kurisu (Jpn) | 0:12:04 |
| 43 | Masaki Amemiya (Jpn) | 0:12:14 |
| 44 | Masaaki Kikuchi (Jpn) Team Nippo | 0:12:58 |
| 45 | Chun Liang Pan (Tpe) Action Cycling Team | 0:13:46 |
| 46 | Masahiko Yasui (Jpn) | 0:13:53 |
| 47 | Hiroki Osaka (Jpn) | 0:14:09 |
| 48 | Makoto Nakamura (Jpn) Utsunomiya Blitzen | 0:15:56 |
| 49 | Sei Uno (Jpn) | 0:16:03 |
| 50 | Yoshihiro Itabashi (Jpn) | Row 49 - Cell 2 |
| 51 | Masamichi Yamamoto (Jpn) Bridgestone Anchor | 0:17:37 |
| 52 | Komuro Masanari (Jpn) | 0:17:46 |
| 53 | Yasumasa Adachi (Jpn) | 0:19:15 |
| 54 | Ryota Tomioka (Jpn) | 0:20:31 |
| 55 | Wei Cheng Lee (Tpe) Action Cycling Team | 0:22:53 |
| 56 | Keisuke Kimura (Jpn) | Row 55 - Cell 2 |
| 57 | Masaki Hirabayashi (Jpn) | 0:24:37 |
| 58 | Masaki Gunji (Jpn) | 0:25:22 |
| 59 | Kenichi Suzuki (Jpn) Aisan Racing Team | 0:26:02 |
| 60 | Kousuke Harakawa (Jpn) | 0:37:28 |
| 61 | Nozomu Kimori (Jpn) | 0:37:33 |
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Jonas Vingegaard lost more time to Tadej Pogačar on stage 13, but team continues to look for opportunities -
'I'm paid to win, not give away races' - Tadej Pogačar refuses to rule out fighting for more Tour de France stage victories
After uphill time trial triumph, Slovenian now up to four stage wins in 2025, further cementing overall lead -
'The Tour is far from over' - Jonas Vingegaard back in the fray after second place in Tour de France stage 13 time trial
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World Champion finished outside of the top 10 and loses time on GC
