| 1 | Steve Chainel (Fra) Bbox Bouygues Telecom | 1:00:52 |
| 2 | Christian Heule (Swi) Rendementhypo Cycling Team | 0:00:01 |
| 3 | Marcel Wildhaber (Swi) Scott-Swisspower Mountainbike-Team | 0:01:53 |
| 4 | Arnaud Grand (Swi) Thömus Racing Team | |
| 5 | Ondrej Bambula (Cze) Cyklo Team Budvar Tábor | |
| 6 | Pirmin Lang (Swi) VC Bützberg / Delta Elite Team | 0:01:56 |
| 7 | Kamil Ausbuher (Cze) Exe Jeans | 0:01:59 |
| 8 | Geert Wellens (Bel) AVB - Cycling Team | 0:02:06 |
| 9 | René Lang (Swi) Delta Elite Team/VC Bützberg | 0:02:31 |
| 10 | Andreas Moser (Swi) Bürgis Cycling Team | 0:02:42 |
| 11 | Christof Bischof (Swi) RV Altenrhein/Bikin Cyprus | 0:02:43 |
| 12 | Milan Barenyi (Svk) | 0:03:05 |
| 13 | Vladimír Kyzivát (Cze) Johnson Controls AS MB | 0:03:29 |
| 14 | Lukas Winterberg (Swi) weishauptcycles. ch / VC Pfaffnau | 0:03:39 |
| 15 | Yves Corminboeuf (Swi) Scott SRAM Le Marechal | 0:03:54 |
| 16 | Martin Haring (Svk) | |
| 17 | David Kášek (Cze) Cyklo Team Budvar Tábor | |
| 18 | Vaclav Metlicka (Svk) Team Král | 0:03:57 |
| 19 | Joris Boillat (Swi) VC - FM | 0:04:15 |
| 20 | Matthias Allenspach (Swi) Tower Sports - VC | 0:04:51 |
| 21 | Moritz Milatz (Ger) Multivan Merida Biking Team | 0:04:57 |
| 22 | Robert Glajza (Svk) | |
| 23 | Matthias Rupp (Swi) Scott-Swisspower Mountainbike-Team | 0:05:03 |
| 24 | Patrick Uhlig (Ger) | 0:05:12 |
| 25 | Raymond Kunzli (Swi) | 0:05:28 |
| 26 | Fabian Giger (Swi) SKS M.I.G. Team - VC Eschenbach | |
| 27 | Marc Singer (Fra) Entente Cycliste Colmar | 0:05:59 |
| 28 | Valentin Scherz (Swi) Pro Cycles-Scott-NewWork | 0:06:13 |
| 29 | Peter Frei (Swi) VC Hittnau | |
| 30 | Rene Murpf (Swi) | |
| 31 | Marcus Kaufmann (Ger) | |
| 32 | Josef Soukup (Cze) | |
| 33 | Jan Chrobák (Cze) Johnson Controls AS MB | |
| 34 | Joël Frey (Swi) | |
| 35 | Marek Canecky (Svk) | |
| 36 | Martin Müller (Swi) VC Steinmaur / Inovex | |
| 37 | Markus Bless (Swi) | |
| 38 | Martin Kiechle (Ger) | |
| 39 | Markus Bauer (Ger) | |
