| 1 | Mouhcine Lahsaini (Mar) Morocco | 3:54:21 |
| 2 | Timo Scholz (Ger) | 0:00:17 |
| 3 | Abdelaati Saadoune (Mar) Morocco | 0:00:29 |
| 4 | Adil Jelloul (Mar) Morocco | |
| 5 | Erik Andrea (Ned) | 0:04:00 |
| 6 | Tarik Chaoufi (Mar) Morocco | |
| 7 | Edgar Tavares (Por) | |
| 8 | Eugène Lokossué (CIv) Ivory Coast | |
| 9 | Abraham Ruhumuriza (Rwa) | |
| 10 | Zakayo Nderi (Ken) Kenya | |
| 11 | Adrien Niyonshuti (Rwa) | |
| 12 | Daniel Korevaar (Ned) | |
| 13 | Benjamin Trouche (Fra) | |
| 14 | Damien Tekou Fokou (Cmr) Cameroon | |
| 15 | Samwel Mwangi (Ken) Kenya | |
| 16 | Nathan Byukusenge (Rwa) | |
| 17 | Bolodigui Ouattara (CIv) Ivory Coast | |
| 18 | Mohamed Erragragui (Mar) Morocco | |
| 19 | Nicodem Habiyambere (Rwa) | |
| 20 | Emanuel Rudahunga (Rwa) | 0:04:11 |
| 21 | Jean De Dieu Uwimana (Rwa) | 0:04:21 |
| 22 | Hillary Kiprotich (Ken) Kenya | |
| 23 | Ismail Ayoune (Mar) Morocco | |
| 24 | Samwel Ekiru (Ken) Kenya | 0:11:08 |
| 25 | Ghislain Ndong (Gab) Gabon | 0:11:47 |
| 26 | Obedi Ruvogera (Rwa) | 0:14:28 |
| 27 | Eric Ngomegnik (Cmr) Cameroon | 0:17:52 |
| 28 | Dirk Oude Ophuis (Ned) | 0:21:03 |
| 29 | Sando Simo (Cmr) Cameroon | |
| 30 | Daniel Alikisente (Uga) Uganda | |
| 31 | Ahmed Ouedraogo (CIv) Ivory Coast | 0:21:05 |
| 32 | David Matovu (Uga) Uganda | |
| 33 | Gasore Hategeka (Rwa) | |
| 34 | David Ndjassy Nombo (Gab) Gabon | |
| 35 | Innocent Nshimiyimana (Rwa) | 0:21:13 |
| 36 | Thijs Poelstra (Ned) | 0:21:14 |
| 37 | Jean De Dieu Nkurunziza (Rwa) | 0:23:06 |
| 38 | Sebastian Kigongo (Uga) Uganda | 0:23:29 |
| 39 | Leone Matovu (Uga) Uganda | 0:23:35 |
| 40 | Innocent Sibomana (Rwa) | 0:23:39 |
| 41 | Nyandwi Uwase (Rwa) | |
| 42 | Gérard Bukuru (Bdi) Burundi | 0:24:31 |
| 43 | Achilese Katumba (Uga) Uganda | 0:27:28 |
| 44 | Franklin Nguimkeng (Cmr) Cameroon | 0:35:40 |
| 45 | N'zarama Kouamé (CIv) Ivory Coast | |
| 46 | Arnaud Ontsassi (Gab) Gabon | 0:39:07 |
| 47 | Gaël Nzougue (Gab) Gabon | |
| 48 | Charles Bucumi (Bdi) Burundi | 0:45:37 |
| DNF | Flavio Pasquino (Ned) | |
