| 1 | Daniel Teklehaymanot (Eri) Eritrea | 4:28:09 |
| 2 | Freqalsi Abrha (Eri) Eritrea | 0:01:13 |
| 3 | Adil Jelloul (Mar) Morocco | 0:01:52 |
| 4 | Soufiane Haddi (Mar) Morocco | 0:02:24 |
| 5 | Dawit Araya (Eri) Eritrea | |
| 6 | Adrien Niyonshuti (Rwa) | 0:02:31 |
| 7 | Tarik Chaoufi (Mar) Morocco | 0:03:23 |
| 8 | Jani Tewelde Weldegaber (Eri) Eritrea | 0:03:28 |
| 9 | Nicodem Habiyambere (Rwa) | 0:04:57 |
| 10 | Lahcen Saber (Mar) Morocco | 0:05:00 |
| 11 | Meran Russan (Eri) Eritrea | 0:05:26 |
| 12 | Nathan Byukusenge (Rwa) | 0:07:39 |
| 13 | Gasore Hategeka (Rwa) | |
| 14 | Emanuel Rudahunga (Rwa) | 0:09:39 |
| 15 | Tesfay Abrhaha Habtemariam (Eri) Eritrea | 0:09:54 |
| 16 | Emmanuel Kipkemei (Ken) Kenya | 0:13:21 |
| 17 | Hillary Kiprotich (Ken) Kenya | 0:13:50 |
| 18 | Simon Kitoki Kumwaka (Ken) Kenya | |
| 19 | Richard Laningo (Tan) Tanzania | 0:14:04 |
| 20 | Ahmed Lhanafi (Mar) Morocco | 0:19:35 |
| 21 | Obedi Ruvogera (Rwa) | 0:19:49 |
| 22 | Nyandwi Uwase (Rwa) | 0:27:43 |
| 23 | Rafiki Uwimana (Rwa) | 0:32:41 |
| 24 | Joseph Echwa (Ken) Kenya | |
| 25 | Issa Ntibitura (Rwa) | |
| 26 | Joseph Biziyaremye (Rwa) | 0:35:10 |
| 27 | Emile Bintunimana (Rwa) | |
| 28 | Gad Ngirowonsanga (Rwa) | 0:37:33 |
| 29 | David Nkurunziza (Rwa) | |
| 30 | Janvier Hadi (Rwa) | 0:50:30 |
| 31 | Innocent Uwamungu (Rwa) | |
| 32 | Peter Muya (Ken) Kenya | 0:51:55 |
| 33 | Emmanuel Raphael (Tan) Tanzania | 1:00:06 |
| 34 | Leone Matovu (Uga) Uganda | 1:02:38 |
| 35 | Wavamunno Muzamiru (Uga) Uganda | 1:02:42 |
| 36 | Sebastian Semakula (Uga) Uganda | 1:02:52 |
| 37 | Saidi Jumanne (Tan) Tanzania | 1:03:03 |
| 38 | Amani Munishi (Tan) Tanzania | 1:09:40 |
| 39 | Mussa Melami (Tan) Tanzania | 1:11:29 |
| 40 | Simon Kimeli (Ken) Kenya | |
| DNS | Samuel Mwiseneza (Rwa) | |
| DNF | Seni Konda (Tan) Tanzania | |
| DNF | Achilese Katumba (Uga) Uganda | |
| DNF | Jacques Mbarushimana (Rwa) | |
