| 1 | Francis Mourey (Fra) FDJ | 0:59:21 |
| 2 | Ralph Naef (Swi) | 0:00:10 |
| 3 | Pirmin Lang (Swi) | 0:00:15 |
| 4 | Lukas Flückiger (Swi) Trek World Racing Team | |
| 5 | Florian Vogel (Swi) | |
| 6 | Andreas Moser (Swi) Zaunteam Mittleand-VC Butzberg | 0:00:17 |
| 7 | Théo Dumanchin (Fra) Amcbisontine | |
| 8 | Marco Aurelio Fontana (Ita) | 0:00:23 |
| 9 | René Lang (Swi) VMC Liestal | 0:00:24 |
| 10 | Nico Brüngger (Swi) EKZ Racing Team | 0:00:26 |
| 11 | Daniel Geismayr (Aut) | 0:00:27 |
| 12 | Mathias Flückiger (Swi) Trek World Racing Team | 0:00:29 |
| 13 | Laurent Colombatto (Fra) Amicale Cycliste Bisontin | 0:00:32 |
| 14 | Lars Forster (Swi) | 0:01:29 |
| 15 | Julien Pion (Fra) Charvieu Chavagneux Isere Cyclisme | 0:01:54 |
| 16 | Martin Gujan (Swi) Cannondale Factory Racing | |
| 17 | Clément Bourgoin (Fra) Charvieu Chavagneux I.C. | 0:01:56 |
| 18 | Melvin Rulliere (Fra) CR Bourgogne | 0:02:11 |
| 19 | Marcus Kaufmann (Ger) | 0:02:25 |
| 20 | Bart Hofman (Bel) | 0:02:26 |
| 21 | Filip Eberl (Cze) | 0:02:27 |
| 22 | Hannes Genze (Ger) | 0:02:37 |
| 23 | Jonas Baumann (Swi) | 0:02:55 |
| 24 | Marcel Wildhaber (Swi) Scott-Swisspower MTB Racing | 0:02:59 |
| 25 | Kévin Bouvard (Fra) Evian-Velo | 0:03:08 |
| 26 | Michael Boros (Cze) | 0:03:18 |
| 27 | Fabian Giger (Swi) | 0:03:19 |
| 28 | Jakub Skala (Cze) | |
| 29 | Matthias Stirnemann (Swi) | 0:03:36 |
| 30 | Thomas Paccagnella (Ita) Work Service | 0:03:54 |
| 31 | Nicola Rohrbach (Swi) Elettroveneta-Corratec | 0:03:55 |
| 32 | Lukas Winterberg (Swi) Philadelphia Cyclocross School | 0:04:30 |
| 33 | Michael Winterberg (Swi) | 0:04:51 |
| 34 | Michal Malík (Cze) | 0:05:20 |
| 35 | Yves Corminboeuf (Swi) | 0:05:56 |
| 36 | Marcel Wyss (Swi) | 0:07:39 |
| 37 | Dario Stäuble (Swi) | |
| 38 | Bryan Falaschi (Ita) Selle Italia Guerciotti | |
| 39 | Sepp Freiburghaus (Swi) Thomus Racing Team | |
| 40 | Vaclav Metlicka (Svk) Johnson Control | |
| 41 | Gabriel Chavanne (Swi) | |
| 42 | Markus Kuriger (Swi) TowerSports-VC Eschenbach | |
| 43 | Sascha Schneider (Ger) | |
| 44 | Peter Frei (Swi) VC Hittnau | |
| 45 | Martin Fanger (Swi) | |
| 46 | Filip Adel (Cze) | |
| 47 | Tristan Marguet (Swi) | |
| 48 | Lukas Müller (Swi) Philadelphia Cyclocross School | |
| 49 | David Guzzardi (Ita) | |
